Genetic Diversity of Chanos Chanos (Forsskål, 1775) from Natural Populations in Vietnam
Authors: Vu Thi Trang, Tran Thi Thuy Ha, Tran Thi Kim Ngan, Nguyen Dinh Vinh, Pham Hong Nhat, Vu Thi Huyen
Vietnam Journal of Agricultural Sciences
: Vol.5, No. 2, 2022 : 1456-1463
Publishing year: 3/2022
The genetic diversity of five natural populations of milkfish (Chanos
chanos) collected in Nghe An, Quang Binh, Binh Dinh, Phu Yen,
Khanh Hoa provinces in Vietnam was examined using COI gene
sequence analysis. Twelve haplotypes were noted from a total of 50
sequences along with 12 variable sites and 6 parsimony informative
sites. The Quang Binh milkfish population had the highest haplotype
(0.889 ± 0.060) and nucleotide diversities (0.00301 ± 0.00049).
Overall, haplotype and nucleotide diversities were 0.804 ± 0.036 and
0.00212 ± 0.00026, respectively. Genetic differentiation (FST) was
high between the milkfish populations of Nghe An – Quang Binh
(0.21744) and Nghe An - Phu Yen (0.26215). Haplotype network
analysis indicated that milkfish populations shared common
haplotypes and each population had its own private haplotypes.
Population structure and demographic expansion were not evident for
all populations except for Quang Binh. This is the first principal
endeavor to understand genetic information of milkfish in Vietnam,
thereby providing information for scientists, managers, and the
general public to establish timely strategies to explore, protect, and
develop milkfish genetic resources in the future.
COI sequences, milkfish, natural populations, genetic diversity, genetic relationship