Deciphering microbial community dynamics along the fermentation course of soy sauce under different temperatures using metagenomic analysis
Authors: Nguyen Thanh Hai NGUYEN1a, Ming Ban HUANG1a, Fa Yong LIU2a, Wei-Ling HUANG1a, Huyen-Trang TRAN3a, Tsai-Wen HSU4a, Chao-Li HUANG5* and Tzen-Yuh CHIANG1
Bioscience of Microbiota Food and Health
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Publishing year: 11/2022
Fermented soy sauce consists of microorganisms that exert beneficial effects. However, the
microbial community dynamics during the fermentation course is poorly characterized. Soy
sauce production is classified into the stages of mash fermentation with koji (S0), brine addition
(S1), microbial transformation (S2), flavor creation (S3), and fermentation completion (S4). In
this study, microbial succession was investigated across stages at different temperatures using
metagenomics analyses. During mash fermentation, Aspergillus dominated the fungal microbiota
in all stages, while the bacterial composition was dominated by Bacillus at room temperature and
by a diverse composition of enriched lactic acid bacteria (LAB) at a controlled temperature.
Compared with a stable fungal composition, bacterial dynamics were mostly attributable to
fluctuations of LAB, which break down carbohydrates into lactic acid. After adding brine,
increased levels of Enterococcus and decreased levels of Lactococcus from S1 to S4 may reflect
differences in salinity tolerance. Staphylococcus, as a fermentation starter at S0, stayed
predominant throughout fermentation and hydrolyzed soybean proteins. Meanwhile, Rhizopus
and Penicillium may improve the flavor. The acidification of soy sauce was likely attributable to
production of organic acids by Bacillus and LAB under room temperature and controlled
temperature conditions, respectively. Metagenomic analysis revealed that microbial succession
was associated with fermentation efficiency and flavor enhancement. Controlled temperature
nurture more LAB than uncontrolled temperatures and may ensure the production of lactic acid
for the development of soy sauce flavor
Aspergillus, LAB, metagenomics, microbial succession, soy sauce